JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COG3_chr13_45459939_45541701	0/0	c0009	2487	2	2	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0010	2487	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0011	2487	1	0	0	0	0	1	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0012	2487	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0013	2487	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0014	2487	1	0	0	0	0	1	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	1/0	c0015	2487	1	0	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0016	2487	1	1	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0017	2487	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0018	2487	1	0	0	0	0	1	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0019	2487	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG4_chr16_70475571_70528554	0/0	c0001	2370	143	15	35	61	9	23	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/1	c0002	2370	110	30	20	47	3	9	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0003	2370	66	27	3	33	0	3	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	1/0	c0004	2370	13	1	9	0	1	1	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0005	2370	7	0	0	7	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0006	2370	2	0	0	0	2	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0007	2370	2	0	2	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0008	2370	2	1	1	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0009	2370	2	0	0	0	0	2	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0010	2370	1	1	0	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0011	2370	1	0	0	0	1	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0012	2370	1	0	0	0	0	1	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0013	2370	1	1	0	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0014	2370	1	0	0	1	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0015	2370	1	0	0	1	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	c0016	2370	1	0	0	0	0	1	copy fasta	COG4	chr16	70475571	70528554
COG6_chr13_39650662_39757628	1/1	c0001	1974	211	38	37	98	11	25	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0002	1974	138	39	24	58	7	10	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0003	1974	6	5	1	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0004	1974	4	1	0	0	0	3	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0005	1974	3	3	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0006	1974	2	0	2	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0007	1974	1	0	0	1	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0008	1974	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0009	1974	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0010	1974	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0011	1974	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	c0012	1974	1	0	0	1	0	0	copy fasta	COG6	chr13	39650662	39757628
COG7_chr16_23383493_23458189	1/1	c0001	2313	220	52	37	88	10	31	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0002	2313	39	16	14	4	0	5	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0003	2313	4	4	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0004	2313	1	0	0	1	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0005	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0006	2313	1	0	0	1	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0007	2313	1	0	1	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0008	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0009	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0010	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	c0011	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189