JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COG7_chr16_23383493_23458189	0/0	c0012	2313	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG8_chr16_69321428_69344564	1/0	c0001	1839	261	59	56	109	12	24	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/1	c0002	1839	82	27	14	17	6	17	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0003	1839	5	5	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0004	1839	2	2	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0005	1839	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0006	1839	1	0	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0007	1839	1	0	0	0	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0008	1839	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0009	1839	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0010	1839	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0011	1839	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0012	1839	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0013	1882	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	c0014	1839	1	0	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COIL_chr17_56933199_56966050	0/0	c0001	1731	347	85	47	170	7	38	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/1	c0002	1731	31	1	23	2	0	4	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	1/0	c0003	1731	23	2	9	1	5	5	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0004	1731	5	4	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0005	1731	3	0	0	3	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0006	1731	2	2	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0007	1731	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0008	1731	1	0	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0009	1731	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0010	1731	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0011	1731	1	0	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0012	1731	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	c0013	1731	1	0	0	0	0	1	copy fasta	COIL	chr17	56933199	56966050
COL10A1_chr6_116113909_116131132	1/1	c0001	2043	235	26	43	127	8	29	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0002	2043	98	20	11	56	3	8	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0003	2043	66	44	17	0	1	4	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0004	2043	5	3	1	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0005	2043	3	0	0	0	0	3	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0006	2043	2	2	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0007	2043	2	0	0	2	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0008	2043	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0009	2043	1	0	0	0	1	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0010	2043	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0011	2043	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0012	2043	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0013	2043	1	1	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0014	2043	1	0	0	0	1	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0015	2043	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0016	2043	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0017	2043	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	c0018	2043	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL11A1_chr1_102871473_103113522	0/1	c0001	5421	45	2	19	12	4	7	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0002	5421	20	19	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	1/0	c0003	5421	19	9	0	5	0	4	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0004	5421	17	13	1	0	2	1	copy fasta	COL11A1	chr1	102871473	103113522