JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL11A1_chr1_102871473_103113522	0/0	c0005	5421	9	1	1	6	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0006	5421	9	9	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0007	5421	6	0	3	2	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0008	5421	5	5	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0009	5421	4	4	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0010	5421	4	3	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0011	5421	4	1	3	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0012	5421	3	3	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0013	5421	3	0	0	3	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0014	5421	3	3	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0015	5421	3	0	0	3	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0016	5421	3	2	0	0	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0017	5421	3	3	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0018	5421	2	2	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0019	5421	2	2	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0020	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0021	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0022	5421	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0023	5421	1	0	0	0	0	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0024	5421	1	0	0	0	0	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0025	5421	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0026	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0027	5421	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0028	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0029	4956	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0030	5421	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0031	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0032	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0033	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0034	5421	1	0	0	0	0	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0035	5421	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0036	5421	1	0	0	0	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0037	5421	1	0	0	0	0	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0038	5421	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	c0039	5421	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A2_chr6_33157694_33197467	0/0	c0001	5211	121	12	28	62	3	16	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0002	5211	53	2	17	19	4	11	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0003	5211	40	0	4	24	5	7	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/1	c0004	5211	30	5	10	5	4	5	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0005	5211	29	25	2	0	2	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0006	5211	27	23	4	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0007	5211	17	3	0	13	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0008	5211	8	7	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0009	5211	5	0	0	5	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0010	5211	5	0	0	5	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0011	5211	4	0	4	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0012	5211	3	3	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0013	5211	2	2	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0014	5211	2	0	0	0	0	2	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0015	5211	2	0	0	2	0	0	copy fasta	COL11A2	chr6	33157694	33197467