Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS10_chr19_8575240_8615715	0/0	c0014	3312	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0015	3312	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0016	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0017	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0018	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0019	3312	1	0	0	0	0	1	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0020	3312	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0021	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	1/0	c0022	3312	1	0	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0023	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0024	3312	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS12_chr5_33518535_33896990	0/0	c0001	4785	73	19	15	33	1	5	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	1/1	c0002	4785	34	4	9	11	3	5	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0003	4785	16	1	1	12	0	2	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0004	4785	13	0	1	12	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0005	4785	8	8	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0006	4785	5	0	2	2	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0007	4785	4	3	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0008	4785	4	0	1	0	1	2	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0009	4785	4	3	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0010	4785	4	0	1	2	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0011	4785	3	3	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0012	4785	3	0	0	2	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0013	4785	2	1	0	1	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0014	4785	2	0	0	0	2	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0015	4785	2	2	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0016	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0017	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0018	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0019	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0020	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0021	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0022	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0023	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0024	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0025	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0026	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0027	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0028	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0029	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0030	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0031	4785	1	0	0	0	1	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0032	4785	1	0	0	1	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0033	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0034	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0035	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0036	4785	1	0	0	1	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0037	4785	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0038	4785	1	0	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	c0039	4785	1	0	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990