JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL11A2_chr6_33157694_33197467	0/0	c0016	5211	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0017	5211	1	0	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0018	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0019	5211	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0020	5211	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0021	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0022	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0023	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0024	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0025	5211	1	0	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0026	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0027	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0028	5211	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0029	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0030	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0031	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0032	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0033	5211	1	1	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	c0034	5211	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL12A1_chr6_75079326_75211053	0/0	c0001	9192	66	9	7	37	2	11	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0002	9192	32	1	6	23	0	2	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0003	9192	30	13	4	7	1	5	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0004	9192	7	2	1	2	0	2	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0005	9192	7	1	1	5	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	1/0	c0006	9192	6	1	0	2	0	2	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0007	9192	3	3	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0008	9192	3	3	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0009	9192	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0010	9192	2	0	2	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0011	9192	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0012	9192	2	1	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0013	9192	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0014	9192	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0015	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0016	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0017	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0018	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0019	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0020	9192	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0021	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0022	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0023	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0024	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/1	c0025	9192	1	0	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0026	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0027	9192	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0028	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0029	9192	1	0	0	0	0	1	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0030	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0031	9192	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053