JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL12A1_chr6_75079326_75211053	0/0	c0032	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0033	9192	1	0	0	0	0	1	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0034	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0035	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0036	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0037	9192	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0038	9192	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0039	9192	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0040	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0041	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0042	9192	1	0	0	0	1	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0043	9192	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0044	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0045	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0046	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0047	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0048	9192	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0049	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0050	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0051	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0052	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0053	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	c0054	9192	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL13A1_chr10_69796906_69964144	0/0	c0001	2187	109	20	23	46	6	14	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/1	c0002	2187	101	40	17	27	4	12	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0003	2187	38	0	9	27	0	2	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0004	2187	22	0	3	9	1	9	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0005	2187	7	7	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0006	2187	6	1	4	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0007	2187	6	4	0	1	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0008	2187	4	4	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0009	2187	3	0	0	2	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0010	2187	2	0	0	2	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0011	2187	2	0	1	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0012	2187	2	0	0	2	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0013	2187	2	1	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0014	2187	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0015	2187	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0016	2187	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0017	2187	1	0	0	0	1	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0018	2187	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0019	2187	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0020	2187	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0021	2187	1	0	0	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0022	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0023	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0024	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0025	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0026	2187	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0027	2187	1	0	0	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144