JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL13A1_chr10_69796906_69964144	0/0	c0028	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	1/0	c0029	2187	1	0	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0030	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0031	2187	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0032	2187	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	c0033	2187	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL14A1_chr8_120120102_120378573	0/0	c0001	5391	59	22	12	14	5	6	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	1/0	c0002	5391	49	7	8	26	1	6	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0003	5391	31	4	4	18	0	5	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0004	5391	11	2	1	6	0	2	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0005	5391	7	6	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0006	5391	6	4	2	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0007	5391	5	5	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0008	5391	4	1	2	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0009	5391	4	4	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0010	5391	3	3	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0011	5391	3	2	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0012	5391	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0013	5391	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0014	5391	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0015	5391	2	0	0	2	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0016	5391	2	1	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0017	5391	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0018	5391	2	0	0	2	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0019	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0020	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0021	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0022	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0023	5391	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0024	5391	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0025	5391	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0026	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0027	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0028	5391	1	0	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0029	5391	1	0	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0030	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0031	5391	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0032	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0033	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0034	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0035	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0036	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0037	5391	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0038	5391	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	c0039	5391	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/1	c0040	5391	1	0	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL15A1_chr9_98938907_99075787	1/1	c0001	4167	45	10	12	10	2	9	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0002	4167	24	1	1	19	1	2	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0003	4167	16	9	4	1	0	2	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0004	4167	15	0	3	8	2	2	copy fasta	COL15A1	chr9	98938907	99075787