JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL15A1_chr9_98938907_99075787	0/0	c0055	4167	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0056	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0057	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0058	4220	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0059	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0060	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0061	4167	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0062	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0063	4167	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0064	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0065	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0066	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0067	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0068	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0069	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0070	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0071	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0072	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0073	4167	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0074	4167	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0075	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0076	4167	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0077	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0078	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0079	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0080	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0081	4167	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	c0082	4167	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL16A1_chr1_31647263_31709017	0/0	c0001	4815	66	3	12	42	5	4	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/1	c0002	4815	63	10	17	20	2	13	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0003	4815	38	8	4	17	2	7	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0004	4815	27	10	4	4	4	5	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0005	4815	22	18	3	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0006	4815	14	13	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0007	4815	13	0	9	4	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0008	4815	10	1	3	2	0	4	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0009	4815	9	2	1	6	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0010	4815	6	0	0	6	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0011	4815	5	5	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0012	4815	4	0	0	1	1	2	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0013	4815	3	2	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0014	4815	3	0	0	3	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0015	4815	3	0	1	0	0	2	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0016	4815	3	2	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0017	4815	3	3	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0018	4815	2	1	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0019	4815	2	0	0	2	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0020	4815	2	1	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0021	4815	2	0	0	2	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0022	4815	2	1	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017