JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL16A1_chr1_31647263_31709017	0/0	c0023	4815	2	2	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0024	4815	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0025	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0026	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0027	4815	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0028	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0029	4815	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0030	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0031	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0032	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0033	4815	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0034	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0035	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0036	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0037	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0038	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	1/0	c0039	4815	1	0	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0040	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0041	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0042	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0043	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0044	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0045	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0046	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0047	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0048	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0049	4815	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0050	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0051	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0052	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0053	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0054	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0055	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0056	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0057	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0058	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0059	4815	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0060	4815	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	c0061	4815	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL17A1_chr10_104026286_104090880	0/1	c0001	4494	77	4	18	45	3	6	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0002	4494	37	11	1	23	0	2	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0003	4494	37	3	10	14	2	8	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0004	4494	22	3	8	6	1	4	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0005	4494	17	0	2	11	2	2	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0006	4494	15	7	2	4	0	2	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0007	4494	11	6	0	4	0	1	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0008	4494	10	8	2	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0009	4494	9	1	3	3	0	2	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	1/0	c0010	4494	9	7	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	c0011	4494	8	7	0	1	0	0	copy fasta	COL17A1	chr10	104026286	104090880