JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL18A1_chr21_45400165_45518720	0/0	c0002	4011	33	1	5	16	5	6	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0003	4011	21	3	8	7	1	2	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0004	4011	21	6	1	10	0	4	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0005	4011	12	0	2	8	0	2	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0006	4011	7	1	6	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0007	4011	6	1	2	2	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0008	4011	5	0	5	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0009	4011	4	0	0	3	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0010	4011	4	0	0	3	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0011	4011	4	3	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0012	4011	4	3	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0013	4011	4	0	2	0	1	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0014	4011	3	0	0	3	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0015	4011	3	0	0	3	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0016	4011	3	0	2	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0017	4011	3	1	1	0	1	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0018	4011	3	3	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0019	4011	3	3	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0020	4011	3	1	2	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0021	4011	3	3	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0022	4011	3	3	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0023	4020	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0024	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0025	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/1	c0026	4011	2	0	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0027	4011	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0028	4011	2	1	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0029	4011	2	0	0	0	2	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0030	4011	2	0	2	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0031	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0032	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0033	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0034	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0035	4011	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0036	4020	2	0	0	2	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0037	4011	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0038	4011	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0039	4020	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0040	4011	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0041	4011	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0042	4011	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0043	4011	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0044	4002	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0045	4011	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0046	4011	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0047	4011	1	0	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0048	4020	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0049	4011	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0050	4020	1	0	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0051	4011	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720