JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL18A1_chr21_45400165_45518720	0/0	c0102	4011	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0103	4011	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	c0104	4011	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL19A1_chr6_69861556_70217468	0/0	c0001	3429	36	11	12	9	1	3	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0002	3429	23	1	7	10	2	3	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0003	3429	23	12	1	8	0	2	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0004	3429	21	15	4	1	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	1/1	c0005	3429	15	2	3	5	2	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0006	3429	15	6	2	6	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0007	3429	10	1	0	9	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0008	3429	9	7	1	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0009	3429	9	7	1	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0010	3429	3	3	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0011	3429	3	0	0	3	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0012	3429	2	0	1	0	1	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0013	3429	2	0	0	0	0	2	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0014	3419	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0015	3429	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0016	3429	1	0	0	0	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0017	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0018	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0019	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0020	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0021	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0022	3429	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0023	3429	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	c0024	3429	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL1A1_chr17_50179101_50206631	0/1	c0001	4395	388	64	72	199	10	42	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0002	4395	9	9	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0003	4395	5	5	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0004	4395	5	3	0	0	0	2	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0005	4395	4	0	4	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0006	4395	3	1	2	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0007	4395	3	3	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0008	4395	2	2	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0009	4395	2	0	0	2	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0010	4395	2	2	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0011	4395	2	2	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0012	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0013	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0014	4395	1	0	0	0	0	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0015	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0016	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0017	4395	1	0	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0018	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0019	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0020	4395	1	0	0	0	1	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0021	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0022	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0023	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631