JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL1A1_chr17_50179101_50206631	0/0	c0024	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0025	4395	1	0	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	1/0	c0026	4395	1	0	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0027	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0028	4395	1	0	0	0	0	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0029	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0030	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0031	4395	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0032	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0033	4395	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	c0034	4395	1	0	0	0	1	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A2_chr7_94389895_94436227	0/1	c0001	4101	91	28	29	22	1	10	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0002	4101	78	5	18	48	1	6	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0003	4101	70	0	1	68	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	1/0	c0004	4101	53	6	9	12	8	17	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0005	4101	38	0	3	22	0	13	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0006	4101	34	5	10	16	3	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0007	4101	16	14	0	2	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0008	4101	15	15	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0009	4101	8	7	1	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0010	4101	3	0	0	3	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0011	4101	3	0	0	3	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0012	4101	2	0	0	2	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0013	4101	2	1	1	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0014	4101	2	1	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0015	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0016	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0017	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0018	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0019	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0020	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0021	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0022	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0023	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0024	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0025	4101	1	0	0	0	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0026	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0027	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0028	4088	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0029	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0030	4101	1	0	0	0	1	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0031	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0032	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0033	4101	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0034	4101	1	0	0	0	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0035	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0036	4101	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	c0037	4101	1	0	0	0	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL20A1_chr20_63288186_63339806	0/1	c0001	3855	176	26	46	75	6	22	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0002	3855	20	13	6	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806