JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL20A1_chr20_63288186_63339806	0/0	c0003	3855	11	0	4	2	1	4	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	1/0	c0004	3855	10	7	2	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0005	3855	8	0	2	6	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0006	3855	6	6	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0007	3855	4	1	1	0	1	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0008	3855	4	4	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0009	3855	3	3	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0010	3855	3	0	3	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0011	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0012	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0013	3855	2	0	0	2	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0014	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0015	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0016	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0017	3855	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0018	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0019	3855	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0020	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0021	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0022	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0023	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0024	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0025	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0026	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0027	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0028	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0029	3855	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0030	3855	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0031	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0032	3855	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0033	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0034	3855	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0035	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0036	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0037	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0038	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0039	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0040	3855	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0041	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0042	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0043	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0044	3855	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0045	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0046	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0047	3855	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	c0048	3855	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL21A1_chr6_56051590_56252580	0/1	c0001	2874	142	35	28	55	5	18	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	1/0	c0002	2874	62	4	19	22	4	12	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0003	2874	10	0	1	7	0	2	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0004	2874	8	8	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580