JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL21A1_chr6_56051590_56252580	0/0	c0005	2874	8	0	0	6	1	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0006	2874	5	0	5	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0007	2874	5	2	3	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0008	2874	4	2	0	0	0	2	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0009	2874	3	1	1	0	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0010	2874	2	2	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0011	2874	2	0	2	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0012	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0013	2874	1	0	0	0	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0014	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0015	2874	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0016	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0017	2874	1	0	1	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0018	2874	1	0	0	0	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0019	2874	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0020	2874	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0021	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0022	2874	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0023	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	c0024	2874	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL22A1_chr8_138583235_138919041	0/0	c0001	4881	17	3	6	5	0	3	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0002	4881	16	4	2	3	1	6	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0003	4881	7	4	1	0	0	2	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0004	4881	7	4	1	1	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0005	4881	6	3	1	0	0	2	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0006	4881	6	5	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0007	4881	6	2	2	2	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0008	4881	5	5	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0009	4881	5	2	0	1	0	2	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0010	4881	4	3	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0011	4881	4	0	0	1	1	2	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0012	4881	4	4	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0013	4881	3	0	3	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0014	4881	3	2	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0015	4881	3	2	0	1	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/1	c0016	4881	3	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0017	4881	3	3	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0018	4881	3	1	0	1	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0019	4881	2	0	1	0	1	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0020	4881	2	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0021	4881	2	0	2	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0022	4881	2	1	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0023	4881	2	1	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0024	4881	2	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0025	4881	2	1	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0026	4881	2	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0027	4881	2	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0028	4881	2	1	0	0	1	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0029	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0030	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041