JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL22A1_chr8_138583235_138919041	0/0	c0031	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0032	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0033	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	1/0	c0034	4881	1	0	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0035	4881	1	0	0	1	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0036	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0037	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0038	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0039	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0040	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0041	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0042	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0043	4881	1	0	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0044	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0045	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0046	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0047	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0048	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0049	4881	1	0	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0050	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0051	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0052	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0053	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0054	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0055	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0056	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0057	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0058	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0059	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0060	4881	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	c0061	4881	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL23A1_chr5_178232618_178595393	0/0	c0001	1623	90	29	11	36	2	12	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0002	1623	40	6	10	15	2	7	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0003	1623	38	23	4	7	0	4	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0004	1623	14	2	5	1	1	5	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0005	1623	13	11	1	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0006	1623	9	6	1	0	0	2	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0007	1623	8	0	6	1	0	1	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0008	1623	8	2	1	5	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0009	1623	2	2	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0010	1506	1	0	1	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0011	1623	1	0	0	0	1	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0013	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0014	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0015	1623	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0016	1623	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0017	1623	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0018	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0019	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393