JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL23A1_chr5_178232618_178595393	0/0	c0020	1623	1	0	0	0	0	1	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0021	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0022	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	c0023	1623	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL24A1_chr1_85724233_86161772	0/1	c0001	5145	34	4	9	16	2	2	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0002	5145	19	7	5	7	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0003	5145	18	6	5	3	3	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0004	5145	15	0	3	11	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0005	5145	10	3	3	3	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0006	5145	9	0	0	7	1	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0007	5145	9	0	3	3	0	3	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0008	5145	6	5	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0009	5145	6	0	0	6	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0010	5145	6	5	0	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0011	5145	5	3	1	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0012	5145	4	0	1	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0013	5145	4	1	0	1	0	2	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0014	5145	4	1	2	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0015	5145	3	0	0	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0016	5145	3	0	0	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0017	5145	3	0	0	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0018	5145	3	2	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	1/0	c0019	5145	3	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0020	5145	3	3	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0021	5145	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0022	5145	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0023	5145	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0024	5145	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0025	5145	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0026	5145	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0027	5145	2	1	0	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0028	5145	2	0	1	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0029	5145	2	0	1	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0030	5145	2	1	0	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0031	5145	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0032	5145	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0033	5145	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0034	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0035	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0036	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0037	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0038	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0039	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0040	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0041	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0042	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0043	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0044	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0045	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0046	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772