JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL24A1_chr1_85724233_86161772	0/0	c0047	5145	1	0	0	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0048	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0049	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0050	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0051	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0052	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0053	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0054	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0055	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0056	5145	1	0	0	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0057	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0058	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0059	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0060	5145	1	0	0	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0061	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0062	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0063	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0064	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0065	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0066	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0067	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0068	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0069	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0070	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0071	5145	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0072	5145	1	0	0	0	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0073	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0074	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0075	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0076	5145	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0077	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	c0078	5145	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL25A1_chr4_108803725_109307658	0/0	c0001	1965	74	37	15	12	1	9	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0002	1965	31	16	6	8	1	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0003	1965	9	4	3	1	1	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0004	1965	7	2	2	0	1	2	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0005	1965	3	3	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0006	1965	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0007	1965	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0008	1965	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0009	1965	1	0	0	1	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0010	1965	1	0	0	0	0	1	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	c0011	1965	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL26A1_chr7_101357875_101564024	0/0	c0001	1326	45	13	7	20	1	4	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	1/0	c0002	1326	26	3	8	10	0	4	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0003	1326	25	7	3	11	2	2	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0004	1326	18	15	2	0	1	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0005	1326	15	12	2	0	1	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0006	1326	11	2	4	2	0	3	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0007	1326	8	3	0	3	2	0	copy fasta	COL26A1	chr7	101357875	101564024