JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL26A1_chr7_101357875_101564024	0/1	c0008	1326	6	0	4	0	1	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0009	1326	3	0	1	0	0	2	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0010	1326	3	3	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0011	1326	2	0	2	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0012	1326	2	0	1	0	1	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0013	1326	2	0	1	0	1	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0014	1326	2	2	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0015	1326	1	0	1	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0016	1326	1	0	0	0	0	1	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0017	1326	1	1	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0018	1326	1	1	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0019	1326	1	1	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	c0020	1326	1	1	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL27A1_chr9_114150537_114317511	0/0	c0001	5583	14	2	2	7	0	3	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0002	5583	10	0	6	0	2	2	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0003	5583	7	0	2	5	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0004	5583	7	0	2	5	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0005	5583	6	0	2	4	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0006	5583	6	0	3	2	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0007	5583	5	1	2	0	1	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0008	5583	5	2	1	1	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0009	5583	5	0	0	5	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0010	5583	5	0	2	0	2	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0011	5583	4	0	1	3	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0012	5583	4	0	0	4	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0013	5583	4	0	0	3	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0014	5583	4	0	0	2	0	2	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0015	5583	4	0	0	4	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0016	5583	4	1	0	1	1	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0017	5583	4	2	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0018	5583	4	1	1	0	0	2	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0019	5583	3	0	1	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0020	5583	3	0	0	3	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0021	5583	3	0	0	0	0	3	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0022	5583	3	0	1	1	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0023	5583	3	0	0	3	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0024	5583	3	1	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0025	5583	3	0	2	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0026	5583	2	1	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0027	5583	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0028	5583	2	1	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0029	5583	2	1	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0030	5583	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0031	5583	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0032	5583	2	0	0	0	0	2	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0033	5583	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0034	5583	2	0	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0035	5583	2	0	1	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0036	5583	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0037	5583	2	0	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511