JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL27A1_chr9_114150537_114317511	0/0	c0088	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0089	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0090	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0091	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0092	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0093	5583	1	0	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0094	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0095	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0096	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0097	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0098	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0099	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0100	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0101	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0102	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0103	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0104	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0105	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0106	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0107	5583	1	0	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0108	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0109	5583	1	0	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0110	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0111	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0112	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0113	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0114	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	1/0	c0115	5583	1	0	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0116	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0117	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0118	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0119	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0120	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0121	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0122	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0123	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0124	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0125	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0126	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0127	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0128	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0129	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0130	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0131	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0132	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0133	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0134	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0135	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0136	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0137	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511