JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL27A1_chr9_114150537_114317511	0/0	c0138	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0139	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0140	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0141	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0142	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0143	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0144	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0145	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0146	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0147	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0148	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0149	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0150	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0151	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0152	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0153	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0154	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0155	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0156	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0157	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0158	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0159	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0160	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0161	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0162	5583	1	0	0	0	1	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0163	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0164	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0165	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0166	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0167	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0168	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0169	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0170	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0171	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/1	c0172	5583	1	0	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0173	5583	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0174	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0175	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0176	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0177	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0178	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0179	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0180	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0181	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0182	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0183	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0184	5583	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0185	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0186	5583	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	c0187	5583	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511