JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL28A1_chr7_7352875_7540873	0/1	c0001	3378	70	10	14	23	8	14	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0002	3378	20	8	5	3	4	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0003	3378	16	2	7	6	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0004	3378	11	11	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0005	3378	5	2	1	1	1	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0006	3378	5	5	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0007	3378	5	4	0	0	1	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0008	3378	4	4	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0009	3378	4	4	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0010	3378	4	3	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0011	3378	3	0	2	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	1/0	c0012	3378	2	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0013	3378	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0014	3378	2	1	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0015	3378	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0016	3378	2	1	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0017	3378	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0018	3378	2	0	2	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0019	3378	2	1	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0020	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0021	3378	1	0	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0022	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0023	3378	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0024	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0025	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0026	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0027	3378	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0028	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0029	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0030	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0031	3378	1	0	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0032	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0033	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0034	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0035	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0036	3378	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0037	3378	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0038	3378	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0039	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0040	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0041	3378	1	0	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0042	3378	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0043	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0044	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0045	3378	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0046	3378	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0047	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0048	3378	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0049	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0050	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873