JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A1_chr13_110143963_110312157	0/0	c0030	5010	3	3	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0031	5010	3	2	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0032	5010	2	0	0	2	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0033	5010	2	2	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0034	5010	2	0	0	1	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0035	5010	2	0	2	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0036	5010	2	0	2	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0037	5010	2	1	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0038	5010	2	2	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0039	5010	2	0	0	1	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0040	5010	2	0	1	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0041	5010	2	0	1	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0042	5010	2	0	0	2	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0043	5010	2	1	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0044	5010	2	0	0	0	0	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0045	5010	2	1	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0046	5010	2	0	0	0	1	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0047	5010	2	0	2	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0048	5010	2	2	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0049	5010	2	0	1	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0050	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0051	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0052	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0053	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0054	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0055	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0056	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0057	5010	1	0	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0058	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0059	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0060	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0061	5010	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0062	5010	1	0	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0063	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0064	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0065	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0066	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0067	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0068	5010	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0069	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0070	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0071	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0072	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0073	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0074	5010	1	0	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0075	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0076	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0077	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0078	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0079	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157