JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A1_chr13_110143963_110312157	0/0	c0080	5010	1	0	0	0	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0081	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0082	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0083	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0084	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0085	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0086	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0087	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0088	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0089	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0090	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0091	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0092	5010	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0093	5010	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0094	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0095	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0096	5010	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0097	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0098	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0099	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0100	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0101	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0102	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0103	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0104	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0105	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0106	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0107	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0108	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0109	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0110	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0111	5010	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0112	5010	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0113	5010	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A2_chr13_110302284_110518209	0/0	c0001	5139	35	4	7	15	4	5	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0002	5139	24	3	4	9	2	6	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0003	5139	23	1	2	17	0	3	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0004	5139	20	0	0	18	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0005	5139	16	0	0	15	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0006	5139	14	0	2	6	2	4	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0007	5139	13	5	6	0	1	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0008	5139	11	1	3	7	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0009	5139	9	0	0	6	0	3	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0010	5139	9	3	3	0	0	3	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0011	5139	8	2	5	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0012	5139	7	0	0	3	2	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0013	5139	7	5	0	0	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0014	5139	7	1	3	1	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0015	5139	7	0	0	7	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0016	5139	7	0	2	4	1	0	copy fasta	COL4A2	chr13	110302284	110518209