JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A2_chr13_110302284_110518209	0/0	c0017	5139	6	0	1	3	1	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0018	5139	5	1	3	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0019	5139	4	2	0	0	1	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0020	5139	4	0	4	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0021	5139	4	0	2	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0022	5139	3	3	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0023	5139	3	0	2	0	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0024	5139	3	0	0	3	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0025	5139	3	0	0	3	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0026	5139	3	1	1	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0027	5139	3	0	0	3	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0028	5139	2	0	0	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0029	5139	2	0	0	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0030	5139	2	0	1	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0031	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0032	5139	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0033	5139	2	0	0	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0034	5139	2	0	0	0	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0035	5139	2	0	1	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0036	5139	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0037	5139	2	0	1	0	0	1	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0038	5139	2	1	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0039	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0040	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0041	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0042	5139	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0043	5139	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0044	5139	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0045	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0046	5139	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0047	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0048	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0049	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0050	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0051	5139	1	0	0	0	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0052	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0053	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0054	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0055	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0056	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0057	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0058	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0059	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0060	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0061	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0062	5139	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0063	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0064	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0065	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0066	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209