JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A2_chr13_110302284_110518209	0/0	c0117	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0118	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0119	5139	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0120	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0121	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	c0122	5139	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A3_chr2_227159624_227319792	0/0	c0001	5013	88	7	16	49	2	14	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0002	5013	30	4	3	17	2	4	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0003	5013	25	1	8	15	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0004	5013	24	19	0	5	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0005	5013	19	1	5	8	2	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0006	5013	19	1	1	15	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	1/0	c0007	5013	14	8	2	2	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0008	5013	13	0	2	7	1	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0009	5013	13	0	3	5	1	4	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0010	5013	10	8	1	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0011	5013	9	5	2	1	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0012	5013	7	0	3	4	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0013	5013	5	2	1	0	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/1	c0014	5013	5	0	0	4	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0015	5013	4	0	0	4	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0016	5013	3	3	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0017	5013	3	2	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0018	5013	3	0	2	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0019	5013	2	0	0	1	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0020	5013	2	0	2	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0021	5013	2	0	1	0	1	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0022	5013	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0023	5013	2	1	1	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0024	5013	2	0	1	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0025	5013	2	0	0	2	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0026	5013	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0027	5013	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0028	5013	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0029	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0030	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0031	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0032	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0033	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0034	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0035	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0036	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0037	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0038	5013	1	0	0	0	1	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0039	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0040	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0041	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0042	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0043	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0044	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792