JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A3_chr2_227159624_227319792	0/0	c0045	5013	1	0	0	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0046	5013	1	0	0	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0047	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0048	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0049	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0050	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0051	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0052	4982	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0053	5013	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0054	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0055	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0056	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0057	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	c0058	5013	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A4_chr2_226997714_227169205	1/0	c0001	5073	72	11	14	36	3	7	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0002	5073	56	3	11	25	5	12	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/1	c0003	5073	22	1	4	11	1	4	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0004	5073	13	5	3	5	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0005	5073	8	7	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0006	5073	7	7	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0007	5073	6	0	1	3	1	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0008	5073	5	5	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0009	5073	5	0	3	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0010	5073	4	4	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0011	5073	4	3	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0012	5073	3	3	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0013	5073	3	3	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0014	5073	3	0	0	0	0	3	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0015	5073	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0016	5073	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0017	5073	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0018	5073	2	1	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0019	5073	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0020	5073	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0021	5073	2	0	2	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0022	5073	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0023	5073	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0024	5073	2	0	1	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0025	5073	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0026	5073	2	1	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0027	5073	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0028	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0029	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0030	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0031	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0032	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0033	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0034	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0035	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0036	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205