JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A4_chr2_226997714_227169205	0/0	c0037	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0038	5073	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0039	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0040	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0041	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0042	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0043	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0044	5073	1	0	0	0	1	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0045	5073	1	0	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0046	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0047	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0048	5073	1	0	0	0	1	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0049	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0050	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0051	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0052	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0053	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0054	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0055	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0056	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0057	5073	1	0	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0058	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0059	5073	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0060	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0061	5073	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0062	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0063	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0064	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0065	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0066	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0067	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0068	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0069	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0070	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0071	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0072	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0073	5073	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	c0074	5073	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A5_chrX_108434838_108702545	1/1	c0001	5076	184	32	35	86	9	20	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0002	5076	47	21	2	22	0	2	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0003	5076	12	11	1	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0004	5076	5	4	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0005	5076	5	0	0	5	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0006	5076	3	0	0	3	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0007	5076	2	0	0	2	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0008	5077	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0009	5076	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0010	5076	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0011	5076	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0012	5076	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545