Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AATK_chr17_81112295_81171221	0/0	c0055	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0056	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0057	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0058	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0059	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0060	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0061	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0062	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0063	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0064	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0065	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0066	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0067	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0068	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0069	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0070	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0071	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0072	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0073	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0074	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0075	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
ABAT_chr16_8669617_8789570	0/0	c0001	1503	127	25	28	48	8	18	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	1/0	c0002	1503	73	30	11	21	3	7	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0003	1503	60	1	10	35	1	13	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0004	1503	29	3	5	17	2	2	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/1	c0005	1503	22	0	3	15	0	3	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0006	1503	13	3	2	6	0	2	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0007	1503	10	10	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0008	1503	5	5	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0009	1503	4	4	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0010	1503	3	1	2	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0011	1503	2	0	2	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0012	1503	2	2	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0013	1503	2	0	2	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0014	1503	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0015	1503	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0016	1503	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0017	1503	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0018	1503	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0019	1503	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0020	1503	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0021	1503	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0022	1503	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	c0023	1503	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABCA10_chr17_69143007_69233824	1/0	c0001	4632	94	17	11	53	3	9	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/1	c0002	4632	80	2	17	44	3	13	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0003	4632	52	11	13	15	7	6	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0004	4626	29	4	13	6	1	5	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0005	4638	14	13	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0006	4626	13	0	2	11	0	0	copy fasta	ABCA10	chr17	69143007	69233824