Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS14_chr10_70667506_70767441	0/0	c0018	3672	4	2	2	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0019	3672	4	1	3	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0020	3672	4	2	2	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0021	3672	4	3	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0022	3672	4	0	0	4	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0023	3672	3	2	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0024	3672	3	0	2	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0025	3672	3	0	1	0	0	2	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0026	3672	3	0	0	2	0	1	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0027	3672	3	0	1	0	1	1	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0028	3672	3	2	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0029	3672	3	3	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0030	3672	2	1	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0031	3672	2	0	1	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0032	3672	2	0	1	0	1	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0033	3672	2	0	2	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0034	3672	2	2	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0035	3672	2	0	0	2	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0036	3672	2	0	0	0	0	2	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0037	3672	2	1	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0038	3672	2	2	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0039	3672	2	2	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0040	3672	2	0	1	0	0	1	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	1/0	c0041	3672	2	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0042	3672	2	1	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0043	3672	2	2	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0044	3672	2	2	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0045	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0046	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0047	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0048	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0049	3672	1	0	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0050	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0051	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0052	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0053	3672	1	0	0	0	1	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0054	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0055	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0056	3672	1	0	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0057	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0058	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0059	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0060	3672	1	0	1	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0061	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0062	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0063	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0064	3672	1	0	0	0	0	1	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0065	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0066	3672	1	0	0	1	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	c0067	3672	1	1	0	0	0	0	copy fasta	ADAMTS14	chr10	70667506	70767441