JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL4A5_chrX_108434838_108702545	0/0	c0013	5076	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0014	5076	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0015	5076	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0016	5076	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0017	5075	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	c0018	5077	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A6_chrX_108150614_108443422	0/0	c0001	5073	105	17	15	59	3	11	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/1	c0002	5073	65	15	16	18	6	9	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0003	5073	23	4	3	13	0	3	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0004	5073	8	7	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	1/0	c0005	5073	6	5	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0006	5073	3	3	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0007	5073	2	0	0	2	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0008	5073	2	2	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0009	5073	2	2	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0010	5073	2	0	0	2	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0011	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0012	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0013	5073	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0014	5072	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0015	5073	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0016	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0017	5073	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0018	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0019	5073	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0020	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0021	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0022	5073	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0023	5073	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0024	5073	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0025	5073	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	c0026	5073	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL5A1_chr9_134636803_134849843	1/0	c0001	5517	51	10	12	20	2	6	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/1	c0002	5517	45	4	13	21	4	2	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0003	5517	34	15	8	8	3	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0004	5517	18	2	4	10	1	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0005	5517	10	7	1	1	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0006	5517	8	6	2	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0007	5517	7	7	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0008	5517	7	0	2	3	0	2	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0009	5517	4	3	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0010	5517	4	3	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0011	5517	4	1	1	0	1	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0012	5517	3	0	1	0	1	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0013	5517	3	0	0	3	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0014	5517	3	0	0	3	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0015	5517	3	0	0	0	1	2	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0016	5517	3	3	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0017	5517	3	0	0	2	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	c0018	5517	2	2	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843