JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL5A3_chr19_9954561_10015504	0/0	c0022	5238	5	5	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0023	5238	4	0	3	0	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0024	5238	4	1	3	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0025	5238	4	1	1	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0026	5238	4	4	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0027	5238	3	1	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0028	5238	3	0	0	3	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0029	5238	3	0	2	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0030	5238	3	1	1	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0031	5238	3	0	0	0	2	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0032	5238	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0033	5238	3	2	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0034	5238	3	0	0	3	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0035	5238	3	0	3	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0036	5238	3	0	0	3	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0037	5238	3	0	0	3	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0038	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0039	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0040	5238	2	0	0	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0041	5238	2	0	0	1	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0042	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0043	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0044	5238	2	0	0	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0045	5238	2	1	0	0	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0046	5238	2	0	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0047	5238	2	0	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0048	5238	2	0	1	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0049	5238	2	0	0	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0050	5238	2	0	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0051	5238	2	0	1	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0052	5238	2	0	1	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0053	5238	2	0	0	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0054	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0055	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0056	5238	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0057	5238	2	0	0	0	0	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0058	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0059	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0060	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0061	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0062	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0063	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0064	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0065	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0066	5238	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0067	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0068	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0069	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0070	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0071	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504