JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL5A3_chr19_9954561_10015504	0/0	c0122	5238	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0123	5229	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0124	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0125	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0126	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0127	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0128	5238	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0129	5238	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0130	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0131	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0132	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0133	5238	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0134	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0135	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0136	5238	1	0	0	0	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0137	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0138	5238	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0139	5238	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0140	5238	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0141	5238	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0142	5238	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0143	5238	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL6A1_chr21_45976770_46010048	1/1	c0001	3087	30	1	11	13	1	2	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0002	3087	29	13	11	0	3	2	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0003	3087	15	1	2	4	1	7	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0004	3087	8	1	1	2	3	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0005	3087	5	0	1	3	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0006	3087	3	3	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0007	3087	3	3	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0008	3087	3	0	2	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0009	3087	2	2	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0010	3087	2	2	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0011	3087	2	0	1	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0012	3087	2	2	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0013	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0014	3087	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0015	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0016	3087	1	0	0	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0017	3087	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0018	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0019	3087	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0020	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0021	3087	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0022	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0023	3087	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0024	3087	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0025	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0026	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0027	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0028	3087	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048