JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A1_chr21_45976770_46010048	0/0	c0029	3087	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0030	3087	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0031	3087	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0032	3087	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0033	3087	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0034	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0035	3087	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	c0036	3087	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A2_chr21_46093112_46134801	0/1	c0001	2752	104	4	22	63	2	12	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0002	2752	83	8	11	55	4	5	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	1/0	c0003	2757	46	11	4	13	3	14	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0004	2757	28	15	4	7	1	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0005	2752	25	6	11	0	4	4	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0006	2752	15	13	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0007	2757	14	1	1	8	2	2	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0008	2757	9	9	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0009	2752	6	4	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0010	2752	2	0	0	0	0	2	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0011	2752	2	0	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0012	2752	2	1	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0013	2752	2	0	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0014	2752	2	0	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0015	2757	2	0	0	1	1	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0016	2757	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0017	2757	2	0	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0018	2757	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0019	2752	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0020	2752	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0021	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0022	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0023	2752	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0024	2752	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0025	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0026	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0027	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0028	2752	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0029	2752	1	0	0	0	1	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0030	2752	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0031	2752	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0032	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0033	2757	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0034	2757	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0035	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0036	2757	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0037	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0038	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0039	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0040	2757	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0041	2757	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	c0042	2757	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801