JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A2_chr21_46093112_46137848	0/1	c0001	3055	77	4	20	38	2	12	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0002	3055	74	7	6	56	0	5	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	1/0	c0003	3060	39	6	4	12	3	13	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0004	3055	21	4	9	0	4	4	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0005	3060	17	9	3	3	1	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0006	3055	12	0	0	12	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0007	3055	10	9	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0008	3060	9	0	1	6	0	2	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0009	3055	7	0	4	0	3	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0010	3060	7	5	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0011	3055	6	4	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0012	3060	5	5	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0013	3060	4	2	0	1	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0014	3055	3	0	0	3	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0015	3055	3	2	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0016	3060	3	1	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0017	3060	3	0	0	3	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0018	3055	2	0	0	0	0	2	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0019	3055	2	0	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0020	3055	2	0	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0021	3055	2	0	2	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0022	3055	2	1	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0023	3055	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0024	3055	2	0	0	2	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0025	3055	2	1	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0026	3055	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0027	3060	2	0	0	0	2	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0028	3060	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0029	3060	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0030	3060	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0031	3060	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0032	3060	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0033	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0034	3055	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0035	3055	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0036	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0037	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0038	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0039	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0040	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0041	3055	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0042	3055	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0043	3055	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0044	3055	1	0	0	0	1	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0045	3055	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0046	3055	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0047	3055	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0048	3055	1	0	0	0	1	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0049	3055	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0050	3055	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848