JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A3_chr2_237319018_237419164	0/0	c0135	9534	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0136	9534	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0137	9534	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0138	9534	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0139	9534	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0140	9534	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0141	9534	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0142	9534	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A5_chr3_130340672_130489846	0/0	c0001	7844	36	2	15	7	3	9	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0002	7845	17	0	0	15	0	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/1	c0003	7844	12	1	1	7	1	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0004	7845	10	3	2	1	0	4	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0005	7844	10	6	3	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0006	7845	10	0	0	8	0	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0007	7845	8	0	3	5	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0008	7845	8	1	4	0	0	3	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0009	7844	8	0	3	4	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0010	7844	7	0	1	4	0	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0011	7845	7	0	0	6	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0012	7845	7	4	0	2	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0013	7845	6	0	0	6	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0014	7844	6	0	0	6	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0015	7845	5	0	4	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0016	7845	5	0	1	1	1	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0017	7845	4	3	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0018	7845	4	4	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0019	7845	4	0	0	4	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0020	7845	4	4	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0021	7845	3	0	3	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0022	7845	3	3	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0023	7845	3	2	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0024	7844	3	0	0	3	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0025	7845	2	0	0	1	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0026	7844	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0027	7845	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0028	7844	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0029	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0030	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0031	7845	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0032	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0033	7845	2	1	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0034	7845	2	0	0	1	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0035	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0036	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0037	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0038	7845	2	0	1	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0039	7845	2	0	0	2	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0040	7844	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0041	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0042	7845	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846