JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A5_chr3_130340672_130489846	0/0	c0093	7845	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0094	7845	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0095	7845	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0096	7845	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0097	7845	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0098	7845	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0099	7844	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0100	7845	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0101	7845	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0102	7845	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0103	7845	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0104	7845	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0105	7845	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0106	7844	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	c0107	7844	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A6_chr3_130512177_130682042	0/1	c0001	6792	32	4	9	10	1	7	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0002	6792	29	4	12	10	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0003	6792	15	1	4	5	0	5	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	1/0	c0004	6792	13	1	0	11	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0005	6792	11	0	2	6	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0006	6792	11	6	5	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0007	6792	10	4	2	2	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0008	6792	9	1	2	4	1	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0009	6792	8	0	2	3	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0010	6792	8	2	0	6	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0011	6792	4	3	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0012	6792	4	0	0	4	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0013	6792	4	1	0	3	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0014	6792	4	4	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0015	6792	3	2	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0016	6792	3	1	0	1	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0017	6792	3	2	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0018	6792	3	1	0	1	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0019	6792	2	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0020	6792	2	0	0	2	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0021	6792	2	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0022	6792	2	0	0	1	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0023	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0024	6792	2	0	0	2	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0025	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0026	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0027	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0028	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0029	6792	2	0	2	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0030	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0031	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0032	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0033	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0034	6792	2	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0035	6792	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042