JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
COL6A6_chr3_130512177_130682042	0/0	c0036	6792	2	0	0	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0037	6792	2	0	0	2	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0038	6792	2	0	0	2	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0039	6792	2	0	0	2	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0040	6792	2	2	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0041	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0042	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0043	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0044	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0045	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0046	6792	1	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0047	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0048	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0049	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0050	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0051	6792	1	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0052	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0053	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0054	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0055	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0056	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0057	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0058	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0059	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0060	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0061	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0062	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0063	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0064	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0065	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0066	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0067	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0068	6809	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0069	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0070	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0071	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0072	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0073	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0074	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0075	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0076	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0077	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0078	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0079	6792	1	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0080	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0081	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0082	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0083	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0084	6792	1	0	0	1	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	c0085	6792	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042