JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A6_chr3_130512177_130682042	0/0	c0086	6792	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL7A1_chr3_48559073_48600329	0/0	c0001	8835	133	52	31	37	4	9	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	1/0	c0002	8835	54	4	15	24	3	7	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/1	c0003	8835	13	0	5	0	1	6	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0004	8835	3	0	3	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0005	8835	3	0	3	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0006	8835	2	1	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0007	8835	2	2	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0008	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0009	8835	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0010	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0011	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0012	8835	1	0	0	0	0	1	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0013	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0014	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0015	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0016	8835	1	0	0	0	0	1	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0017	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0018	8835	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0019	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0020	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0021	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0022	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0023	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0024	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0025	8835	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0026	8835	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0027	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0028	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0029	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0030	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0031	8835	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0032	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	c0033	8835	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL8A1_chr3_99633594_99804217	1/1	c0001	2235	251	66	51	83	12	37	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0002	2235	5	5	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0003	2235	2	2	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0004	2235	1	1	0	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0005	2235	1	0	1	0	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0006	2235	1	0	0	0	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	c0007	2235	1	0	0	1	0	0	copy fasta	COL8A1	chr3	99633594	99804217
COL8A2_chr1_36090239_36130222	1/1	c0001	2112	224	69	37	83	7	26	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0002	2112	64	3	9	50	0	2	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0003	2112	28	1	5	20	0	2	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0004	2112	19	0	0	19	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0005	2112	17	1	6	9	0	1	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0006	2112	14	10	4	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0007	2112	5	0	2	0	0	3	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0008	2112	2	0	0	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0009	2112	2	0	0	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222