JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL8A2_chr1_36090239_36130222	0/0	c0010	2112	2	0	0	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0011	2112	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0012	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0013	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0014	2112	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0015	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0016	2112	1	0	1	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0017	2112	1	0	0	0	1	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0018	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0019	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0020	2112	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0021	2112	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0022	2112	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	c0023	2112	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL9A1_chr6_70211126_70308084	1/1	c0001	2766	106	4	16	69	4	11	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0002	2766	62	20	12	24	0	6	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0003	2766	30	9	8	3	3	7	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0004	2766	25	7	7	6	1	4	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0005	2766	19	4	9	1	3	2	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0006	2766	17	0	0	16	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0007	2766	15	5	3	7	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0008	2766	13	6	5	2	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0009	2766	13	0	1	12	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0010	2766	11	10	1	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0011	2766	9	9	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0012	2766	7	0	4	1	0	2	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0013	2766	5	0	0	5	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0014	2766	5	3	0	2	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0015	2766	3	3	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0016	2766	2	0	0	0	0	2	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0017	2766	2	0	0	2	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0018	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0019	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0020	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0021	2766	1	0	1	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0022	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0023	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0024	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0025	2766	1	0	0	0	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0026	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0027	2766	1	0	0	0	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0028	2766	1	0	0	1	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0029	2766	1	0	0	1	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0030	2766	1	0	0	0	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0031	2766	1	0	0	1	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0032	2766	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0033	2766	1	0	0	0	1	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0034	2766	1	0	0	1	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	c0035	2766	1	0	1	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A2_chr1_40295489_40322286	1/0	c0001	2070	164	43	26	51	14	29	copy fasta	COL9A2	chr1	40295489	40322286