JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL9A2_chr1_40295489_40322286	0/0	c0002	2070	140	18	24	90	0	8	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0003	2070	34	3	9	19	0	3	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0004	2070	31	12	3	9	1	6	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0005	2070	31	6	7	16	0	2	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0006	2070	5	0	5	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0007	2070	3	3	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0008	2070	3	0	0	3	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/1	c0009	2070	3	0	1	0	1	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0010	2070	2	1	0	0	1	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0011	2070	2	2	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0012	2070	2	2	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0014	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0015	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0016	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0017	2070	1	0	0	0	1	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0018	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0019	2070	1	0	1	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0020	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0021	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0022	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0023	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0024	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0025	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0026	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0027	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0028	2070	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0029	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	c0030	2070	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A3_chr20_62812050_62846159	0/0	c0001	2055	88	10	22	33	6	17	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	1/0	c0002	2055	51	2	14	24	1	9	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0003	2055	49	1	7	39	0	2	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0004	2055	29	8	4	15	0	2	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0005	2055	26	0	2	22	1	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0006	2055	16	0	3	8	0	5	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0007	2055	12	6	0	6	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0008	2055	12	10	2	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0009	2055	12	11	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0010	2055	11	6	2	2	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0011	2055	7	0	1	5	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0012	2055	7	0	6	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0013	2055	7	3	0	4	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0014	2055	5	5	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0015	2055	5	0	5	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0016	2055	4	0	1	3	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0017	2055	3	0	3	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0018	2055	3	0	2	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0019	2055	3	0	0	3	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0020	2055	3	1	1	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0021	2055	3	3	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159