JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL9A3_chr20_62812050_62846159	0/0	c0022	2055	3	3	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0023	2055	2	2	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0024	2055	2	0	0	2	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0025	2055	2	2	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0026	2055	2	0	2	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0027	2055	2	2	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0028	2055	2	1	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0029	2055	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0030	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0031	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0032	2055	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/1	c0033	2055	1	0	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0034	2055	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0035	2055	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0036	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0037	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0038	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0039	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0040	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0041	2055	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0042	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0043	2055	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0044	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0045	2044	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0046	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0047	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0048	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0049	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0050	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0051	2055	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0052	2055	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0053	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0054	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0055	2055	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0056	2055	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0057	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0058	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0059	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0060	2055	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0061	2055	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0062	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0063	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0064	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0065	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0066	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0067	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0068	2055	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	c0069	2055	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COLEC10_chr8_119062247_119113455	1/1	c0001	834	365	74	59	177	11	42	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	c0002	834	9	8	1	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455