JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COMMD10_chr5_116080025_116298287	0/0	c0006	609	1	1	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	c0007	609	1	0	0	1	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD1_chr2_61900674_62141058	1/1	c0001	573	275	84	34	122	7	26	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	c0002	573	6	1	2	0	1	2	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	c0003	573	2	2	0	0	0	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	c0004	573	2	0	0	0	2	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	c0005	573	1	1	0	0	0	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD2_chr3_149733472_149757489	0/0	c0001	600	145	54	16	67	1	7	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	c0002	600	117	37	14	51	4	11	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	1/1	c0003	600	87	3	24	44	4	10	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	c0004	600	73	3	16	34	5	15	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	c0005	573	1	0	0	0	0	1	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	c0006	600	1	1	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD3_chr10_22311388_22325306	1/1	c0001	588	253	54	52	111	8	26	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	c0002	588	54	44	8	0	0	2	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	c0003	588	1	0	0	1	0	0	copy fasta	COMMD3	chr10	22311388	22325306
COMMD4_chr15_75331063_75345273	1/1	c0001	600	390	90	63	178	16	41	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	c0002	600	35	1	11	22	0	1	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	c0003	600	2	2	0	0	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	c0004	600	1	0	0	1	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	c0005	600	1	0	0	1	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	c0006	600	1	1	0	0	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD5_chr8_144845176_144858048	1/0	c0001	675	328	90	59	146	11	21	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/1	c0002	675	93	2	22	49	3	16	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	c0003	675	2	1	1	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	c0004	675	2	2	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	c0005	675	1	0	0	0	0	1	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	c0006	675	1	0	0	1	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	c0007	675	1	1	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD6_chr13_75520214_75542841	1/1	c0001	258	394	93	72	169	14	44	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	c0002	258	1	0	0	1	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	c0003	258	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD7_chr20_32697699_32748467	1/1	c0001	603	399	90	76	171	16	44	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	c0002	603	1	0	0	1	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD8_chr4_47445787_47468702	1/1	c0001	552	366	70	59	179	14	42	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0002	552	13	12	1	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0003	552	6	6	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0004	552	4	4	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0005	552	3	3	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0006	552	1	0	0	0	0	1	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0007	552	1	0	0	0	0	1	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0008	552	1	1	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	c0009	552	1	0	0	1	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD9_chr11_36267292_36294424	1/1	c0001	597	440	91	79	212	15	41	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	c0002	597	3	3	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	c0003	597	2	1	1	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	c0004	597	1	1	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	c0005	597	1	0	0	0	0	1	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	c0006	597	1	0	0	0	1	0	copy fasta	COMMD9	chr11	36267292	36294424
COMP_chr19_18777773_18796305	1/1	c0001	2274	350	69	73	143	17	46	copy fasta	COMP	chr19	18777773	18796305