JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COMP_chr19_18777773_18796305	0/0	c0002	2274	22	18	4	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0003	2274	5	0	0	5	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0004	2274	4	3	1	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0005	2274	4	0	3	0	1	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0006	2274	4	4	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0007	2274	2	2	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0008	2274	2	0	1	0	0	1	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0009	2274	2	0	0	2	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0010	2274	1	1	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0011	2274	1	1	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	c0012	2274	1	0	0	0	0	1	copy fasta	COMP	chr19	18777773	18796305
COMTD1_chr10_75228641_75240957	1/1	c0001	789	395	89	71	181	16	36	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0002	789	5	0	0	5	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0003	789	3	0	0	3	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0004	789	3	0	0	3	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0005	789	1	0	1	0	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0006	789	1	0	0	1	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0007	789	1	0	0	1	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	c0008	789	1	1	0	0	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMT_chr22_19936772_19974975	0/0	c0001	816	136	18	33	60	5	20	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/1	c0002	816	114	11	23	60	8	11	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	1/0	c0003	816	97	20	14	51	2	9	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0004	816	25	23	1	0	1	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0005	816	17	9	0	8	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0006	816	12	0	3	9	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0007	816	8	4	0	4	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0008	816	5	4	1	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0009	816	4	3	0	1	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0010	816	3	0	0	3	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0011	816	2	0	1	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0012	816	1	0	0	0	0	1	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0013	816	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	c0014	816	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COP1_chr1_175939831_176212286	1/1	c0001	2196	256	63	62	96	6	27	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0002	2196	30	17	2	4	0	7	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0003	2196	5	3	2	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0004	2196	4	0	0	4	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0005	2196	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0006	2196	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0007	2196	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0008	2196	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	c0009	2196	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COPA_chr1_160283594_160348250	0/0	c0001	3675	214	64	41	81	6	22	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	1/1	c0002	3675	116	9	28	63	4	10	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0003	3675	10	0	0	10	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0004	3675	10	8	2	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0005	3675	5	0	3	0	2	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0006	3675	3	3	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0007	3675	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0008	3675	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250