JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COPA_chr1_160283594_160348250	0/0	c0009	3675	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0010	3675	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0011	3675	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0012	3675	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0013	3675	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	c0014	3675	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPB1_chr11_14452512_14504811	1/1	c0001	2862	380	84	67	167	16	44	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0002	2862	1	0	0	1	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0003	2862	1	1	0	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0004	2862	1	1	0	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0005	2862	1	0	0	1	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0006	2862	1	0	1	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	c0007	2862	1	0	0	1	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB2_chr3_139352406_139394647	1/1	c0001	2721	254	92	59	55	12	34	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	c0002	2721	4	0	0	4	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	c0003	2721	3	0	0	3	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	c0004	2721	2	0	0	2	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	c0005	2721	1	0	1	0	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPE_chr19_18894514_18924387	1/0	c0001	927	116	12	17	61	6	19	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/1	c0002	927	93	6	26	39	7	14	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0003	927	72	36	11	14	1	10	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0004	927	17	17	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0005	927	7	7	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0006	927	4	4	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0007	927	3	0	0	3	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0008	927	3	3	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0009	927	3	0	0	3	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0010	927	2	1	1	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0011	927	2	2	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0012	927	1	0	0	0	0	1	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0013	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0014	927	1	0	1	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0015	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0016	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0017	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0018	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	c0019	927	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPG1_chr3_129244606_129282773	1/1	c0001	2625	216	31	52	91	10	30	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0002	2625	27	6	0	16	0	5	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0003	2625	26	25	1	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0004	2625	16	10	6	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0005	2625	14	3	5	1	2	3	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0006	2625	10	7	3	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0007	2625	4	0	0	4	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0008	2625	2	2	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0009	2625	2	2	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0010	2625	1	0	1	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0011	2625	1	1	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0012	2625	1	0	1	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0013	2625	1	1	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773