JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COPG1_chr3_129244606_129282773	0/0	c0014	2625	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0015	2625	1	0	1	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0016	2625	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0017	2625	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	c0018	2625	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG2_chr7_130501238_130673748	1/1	c0001	2616	203	63	39	62	11	26	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0002	2616	105	21	20	44	2	18	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0003	2616	3	2	1	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0004	2616	2	0	0	2	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0005	2616	2	2	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0006	2616	2	0	0	2	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0007	2616	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0008	2616	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0009	2616	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0010	2616	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0011	2616	1	0	0	0	1	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0012	2616	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0013	2616	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0014	2616	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	c0015	2616	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPRS_chr17_31846871_31864244	0/1	c0001	555	314	94	58	116	10	35	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	1/0	c0002	555	55	0	12	34	2	6	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	c0003	555	1	0	0	0	0	1	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	c0004	555	1	1	0	0	0	0	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	0/0	c0005	555	1	1	0	0	0	0	copy fasta	COPRS	chr17	31846871	31864244
COPS2_chr15_49117727_49160599	1/1	c0001	1332	363	89	53	169	13	37	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	c0002	1332	33	4	11	2	3	13	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	c0003	1332	1	1	0	0	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS2_chr15_49117727_49160599	0/0	c0004	1332	1	0	0	1	0	0	copy fasta	COPS2	chr15	49117727	49160599
COPS3_chr17_17241616_17286246	1/0	c0001	1272	209	65	38	68	8	29	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/1	c0002	1272	141	27	30	66	4	13	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/0	c0003	1272	1	0	0	1	0	0	copy fasta	COPS3	chr17	17241616	17286246
COPS3_chr17_17241616_17286246	0/0	c0004	1272	1	0	0	1	0	0	copy fasta	COPS3	chr17	17241616	17286246
COPS4_chr4_83030183_83080818	1/1	c0001	1221	369	88	48	181	8	42	copy fasta	COPS4	chr4	83030183	83080818
COPS4_chr4_83030183_83080818	0/0	c0002	1221	1	1	0	0	0	0	copy fasta	COPS4	chr4	83030183	83080818
COPS4_chr4_83030183_83080818	0/0	c0003	1221	1	1	0	0	0	0	copy fasta	COPS4	chr4	83030183	83080818
COPS4_chr4_83030183_83080818	0/0	c0004	1221	1	0	0	1	0	0	copy fasta	COPS4	chr4	83030183	83080818
COPS5_chr8_67038079_67067133	1/1	c0001	1005	226	51	45	94	12	22	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	c0002	1005	64	35	7	12	0	10	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	c0003	1005	1	0	0	0	0	1	copy fasta	COPS5	chr8	67038079	67067133
COPS5_chr8_67038079_67067133	0/0	c0004	1005	1	0	0	0	0	1	copy fasta	COPS5	chr8	67038079	67067133
COPS6_chr7_100083969_100097187	1/1	c0001	984	400	82	72	177	18	49	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0002	984	9	0	0	9	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0003	984	9	9	0	0	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0004	984	1	1	0	0	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0005	984	1	0	0	1	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0006	984	1	0	0	0	0	1	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	c0007	1000	1	0	0	1	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS7A_chr12_6719046_6736865	1/1	c0001	828	414	71	81	199	17	44	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	c0002	828	59	24	5	27	1	2	copy fasta	COPS7A	chr12	6719046	6736865