JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COPS7A_chr12_6719046_6736865	0/0	c0003	828	1	1	0	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7B_chr2_231781445_231814253	1/1	c0001	795	346	95	66	121	18	44	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	c0002	795	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	c0003	795	1	0	0	1	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS8_chr2_237080889_237105474	1/1	c0001	630	343	93	68	128	10	42	copy fasta	COPS8	chr2	237080889	237105474
COPS8_chr2_237080889_237105474	0/0	c0002	630	5	5	0	0	0	0	copy fasta	COPS8	chr2	237080889	237105474
COPS9_chr2_240125828_240141305	1/1	c0001	174	442	96	72	206	16	50	copy fasta	COPS9	chr2	240125828	240141305
COPZ1_chr12_54320131_54356846	1/1	c0001	534	351	86	65	148	16	34	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	c0002	534	13	3	1	9	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	c0003	534	3	3	0	0	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	c0004	534	1	0	0	1	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ2_chr17_48021167_48042797	1/1	c0001	633	361	78	69	158	14	40	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0002	633	29	18	6	0	4	1	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0003	633	1	0	1	0	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0004	633	1	0	0	0	0	1	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0005	633	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0006	633	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0007	633	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	c0008	633	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COQ10A_chr12_56261942_56275966	1/1	c0001	744	314	85	70	111	10	36	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	c0002	744	17	0	4	11	2	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	c0003	744	1	1	0	0	0	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10B_chr2_197448552_197480310	1/0	c0001	717	326	80	65	134	11	35	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/1	c0002	717	57	2	10	38	3	3	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	c0003	717	4	4	0	0	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	c0004	717	2	0	0	2	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	c0005	717	1	0	1	0	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ2_chr4_83258824_83289798	0/0	c0001	1116	197	37	42	94	4	20	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/1	c0002	1116	62	9	18	22	4	8	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0003	1116	41	34	4	0	1	2	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	1/0	c0004	1116	10	5	1	2	1	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0005	1116	8	0	2	6	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0006	1116	8	1	1	6	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0007	1116	4	1	0	0	0	3	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0008	1116	3	3	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0009	1116	2	0	0	2	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0010	1116	2	2	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0011	1116	1	0	1	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0012	1116	1	0	1	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0013	1116	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0014	1116	1	0	0	0	0	1	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0015	1116	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0016	1116	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	c0017	1116	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ3_chr6_99364401_99399195	0/0	c0001	1110	213	38	63	78	5	29	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/1	c0002	1110	135	24	16	75	7	12	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	c0003	1110	59	7	5	39	6	2	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	1/0	c0004	1110	19	15	3	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	c0005	1110	4	4	0	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	c0006	1110	1	0	0	1	0	0	copy fasta	COQ3	chr6	99364401	99399195