JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COQ3_chr6_99364401_99399195	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	c0008	1110	1	0	1	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	c0009	1110	1	0	0	0	0	1	copy fasta	COQ3	chr6	99364401	99399195
COQ4_chr9_128317839_128339072	0/1	c0001	798	264	47	43	121	14	38	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0002	798	85	20	5	55	1	4	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0003	798	11	9	1	0	1	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0004	798	4	4	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0005	798	2	0	0	2	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	1/0	c0006	798	2	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0007	798	1	0	0	0	0	1	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0008	798	1	0	1	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0009	798	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0010	798	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0011	798	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	c0012	798	1	0	0	0	0	1	copy fasta	COQ4	chr9	128317839	128339072
COQ5_chr12_120498279_120534158	1/1	c0001	984	195	52	35	73	12	21	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0002	984	105	6	20	65	1	13	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0003	984	60	32	11	12	1	4	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0004	984	21	7	3	6	1	4	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0005	984	2	0	0	2	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0006	984	1	0	0	1	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0007	984	1	0	0	1	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0008	984	1	0	0	0	1	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0009	984	1	1	0	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	c0010	984	1	0	1	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ6_chr14_73945302_73968670	1/1	c0001	1407	210	48	38	101	6	15	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0002	1407	92	15	4	61	1	11	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0003	1407	81	17	10	40	2	12	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0004	1407	57	7	20	17	5	8	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0005	1407	5	4	1	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0006	1407	3	3	0	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0007	1407	2	0	0	0	2	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0008	1407	2	2	0	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0009	1407	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0010	1402	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0011	1407	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	c0012	1407	1	0	1	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ7_chr16_19062614_19085095	0/0	c0001	654	190	17	28	113	6	26	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	1/0	c0002	654	90	57	9	7	0	16	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/1	c0003	654	69	13	17	30	4	4	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0004	654	10	1	6	3	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0005	654	4	0	0	4	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0006	654	3	3	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0007	654	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0008	654	1	0	0	0	0	1	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0009	654	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0010	654	1	0	0	0	0	1	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0011	654	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	c0012	654	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ8A_chr1_226935294_226992544	1/1	c0001	1944	302	63	55	145	8	29	copy fasta	COQ8A	chr1	226935294	226992544