JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COQ8A_chr1_226935294_226992544	0/0	c0002	1944	39	2	10	18	3	6	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0003	1944	22	2	11	0	5	4	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0004	1944	14	13	1	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0005	1944	7	0	0	6	0	1	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0006	1944	6	1	1	0	1	3	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0007	1944	5	5	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0008	1944	3	1	0	0	0	2	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0009	1944	2	0	1	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0010	1944	2	0	0	2	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0011	1944	1	0	1	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0012	1944	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0013	1944	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0014	1944	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0015	1944	1	0	0	0	0	1	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0016	1944	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0017	1944	1	0	0	0	1	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0018	1944	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0019	1944	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	c0020	1944	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8B_chr19_40686530_40721886	0/0	c0001	1635	165	21	41	77	8	18	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	1/0	c0002	1635	94	37	2	49	2	3	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/1	c0003	1635	78	7	14	37	2	17	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0004	1635	29	14	11	1	2	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0005	1635	8	0	0	8	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0006	1635	5	5	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0007	1635	4	1	2	0	1	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0008	1635	4	4	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0009	1635	3	0	0	3	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0010	1635	3	0	2	0	1	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0011	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0012	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0013	1635	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0014	1635	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0015	1635	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0016	1635	1	0	1	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0017	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0018	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0019	1635	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0020	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0021	1635	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0022	1635	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0023	1635	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0024	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0025	1635	1	0	1	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0026	1635	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	c0027	1635	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ9_chr16_57442479_57466270	1/1	c0001	957	383	82	64	182	13	40	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0002	957	9	5	1	2	1	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0003	957	4	1	0	3	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0004	957	2	0	0	0	0	2	copy fasta	COQ9	chr16	57442479	57466270