JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COQ9_chr16_57442479_57466270	0/0	c0005	957	1	1	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0006	957	1	0	0	0	0	1	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0007	957	1	1	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0008	957	1	0	0	0	0	1	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0009	957	1	0	0	1	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	c0010	957	1	0	1	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
CORIN_chr4_47589001_47843067	0/1	c0001	3129	94	33	7	43	2	8	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0002	3129	58	12	20	13	5	8	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0003	3129	47	15	5	26	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0004	3129	13	3	5	2	2	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	1/0	c0005	3129	9	0	5	1	1	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0006	3129	4	4	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0007	3129	4	0	1	0	1	2	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0008	3129	4	4	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0009	3129	3	3	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0010	3129	2	0	0	0	0	2	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0011	3129	2	1	1	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0012	3129	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0013	3129	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0014	3129	1	0	1	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0015	3129	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0016	3129	1	0	0	1	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0017	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0018	3129	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0019	3129	1	0	0	0	1	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0020	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0021	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0022	3129	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0023	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0024	3129	1	0	0	1	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0025	3129	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0026	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0027	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0028	3129	1	0	1	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0029	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0030	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0031	3129	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0032	3129	1	0	0	1	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	c0033	3129	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORO1A_chr16_30178602_30194076	0/0	c0001	1386	272	72	45	125	7	23	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	1/1	c0002	1386	58	2	19	18	7	10	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0003	1386	3	2	1	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0004	1386	3	3	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0005	1386	2	2	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0006	1386	1	1	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0007	1386	1	0	1	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0008	1386	1	0	0	0	0	1	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1B_chr11_67430510_67448476	1/1	c0001	1470	318	84	46	139	13	34	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0002	1470	16	0	15	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476