JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CORO1B_chr11_67430510_67448476	0/0	c0003	1470	4	4	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0004	1470	3	0	0	3	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0005	1470	3	2	1	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0006	1470	2	0	0	2	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0007	1470	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0008	1470	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0009	1501	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0010	1470	1	0	0	0	1	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0011	1470	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0012	1470	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0013	1470	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	c0014	1470	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1C_chr12_108640109_108736518	1/1	c0001	1425	314	72	53	136	14	37	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0002	1425	5	4	1	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0003	1425	2	0	0	2	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0004	1425	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0005	1425	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0006	1425	1	0	0	0	0	1	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0007	1425	1	0	0	1	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	c0008	1425	1	0	0	1	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO2A_chr9_98115975_98197637	1/1	c0001	1578	316	82	54	129	10	39	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0002	1578	9	0	6	1	0	2	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0003	1578	4	0	0	4	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0004	1578	3	0	0	3	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0005	1578	3	0	0	3	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0006	1578	2	2	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0007	1578	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0008	1578	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0009	1578	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0010	1578	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	c0011	1578	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2B_chr15_68573993_68732806	1/0	c0001	1443	214	68	39	66	8	32	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/1	c0002	1443	24	4	10	5	0	4	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0003	1443	7	7	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0004	1443	5	5	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0005	1443	3	0	1	0	2	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0006	1443	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	c0008	1443	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO6_chr17_29609762_29627912	1/1	c0001	1419	353	86	75	132	14	44	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	c0002	1419	10	6	2	0	2	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	c0003	1419	3	0	1	0	2	0	copy fasta	CORO6	chr17	29609762	29627912
CORO7_chr16_4349542_4421596	0/0	c0001	2778	123	14	29	53	7	20	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/1	c0002	2778	118	38	26	34	5	14	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0003	2778	15	15	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0004	2778	13	13	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0005	2778	4	4	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0006	2778	3	0	3	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0007	2778	2	2	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0008	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596